Skip to main content

Common Causes of Non-Bloody, Chronic Diarrhea: Inadequate Weight Gain

Common Causes of Non-Bloody, Chronic Diarrhea: Inadequate Weight Gain 

Note: This list is not exhaustive
Diagnosis
Clinical Features
Laboratory/Imagining Testing
Initial Management

Inflammatory bowel disease (IBD)

  • Possible blood in stool (blood is more common in colitis)
  • Stooling urgency and frequency 
  • Nocturnal stools 
  • Abdominal pain
  • Fatigue
  • Weight loss 
  • ESR and CRP elevation 
  • CBC: Iron deficiency anemia, reactive thrombocytosis
  • CMP: Hypoalbuminemia, electrolyte abnormalities
  • Fecal calprotectin elevated (often > 250 µg/g) 
  • Infectious stool studies negative
  • Imaging may show bowel wall thickening
  • Consider PRBC transfusion if Hgb <7 g/dL or <8 g/dL with symptoms (fatigue, dizziness, tachycardia) 
  • IVF if signs of dehydration or significant diarrhea
  • Pain management: avoid opioids and NSAIDs; prefer acetaminophen as needed
  • Consult GI specialists for EGD/colonoscopy with biopsies to confirm diagnosis and provide further management
    • Treatment may involve corticosteroids and/or immunosuppressants 

Food protein-induced allergic proctocolitis (FPIAP)

  • Most common triggers are cow’s milk and soy proteins
  • May have diarrhea (+/- blood), vomiting, and growth failure 
  • Often presents within the first few months of life but can persist up to age 3
  • Diagnosed clinically; labs and imaging are generally not needed
  • Guaiac fecal occult blood test (gFOBT) may be positive
  • CBC: Possible iron deficiency anemia 
  • IV fluids if signs of dehydration or significant diarrhea
  • Dietary elimination of cow’s milk +/- soy (for at least 2 weeks)
  • Consider hydrolyzed or elemental formula
  • Consider Nutrition consult 
  • Generally resolves by 1-2 years of age. Consider rechallenge of food protein ~1 year of age.

Celiac disease

  • Various presenting symptoms including abdominal distension, constipation or diarrhea, rashes, joint pain, headaches 
  • Weight loss or poor weight gain
  • Anti-Tissue Transglutaminase IgA (tTG-IgA) diagnostic algorithm (must be eating a gluten-containing diet for accurate results) 
    • Total serum IgA (may be deficient) 
    • Elevated tTG IgA, +/- positive antiendomysial IgA antibodies
  • If under 2 years old or IgA deficient: elevated deaminated gliadin peptide (DGP) IgG
  • Duodenal biopsy histology for confirmation: Villous blunting and intraepithelial lymphocytes
  • HLA genetic testing (HLA-DQ2/DQ8) not necessary unless testing is inconclusive (negative HLA DQ2/DQ8 rules out celiac disease)
  • Consult GI specialists for EGD with biopsies to confirm diagnosis (must be eating a gluten-containing diet for accurate results) 
  • Treatment is a lifelong strict gluten-free diet; recommend establishing with a multidisciplinary team including a GI specialist and Nutrition for initial education and monitoring 

Immunodeficiency 

  • Recurrent infections
  • Often presents in infancy 
  • Immunoglobulin testing: Low IgG, low IgA, high IgM
  • CBC: Lymphopenia
  • Low antigen titers to previous immunizations 
  • Consider referral to Immunology specialists for further evaluation and treatment of primary immunodeficiency 
  • Supportive care

Autoimmune enteropathy

  • Rare cause of refractory secretory diarrhea
  • Protein losing enteropathy
  • Typically associated with severe weight loss and malnutrition
  • Serum antienterocyte, antigoblet cell, anticolonocyte antibodies may be positive 
  • Serum hypoalbuminemia and positive fecal alpha 1 antitrypsin (A1AT)
  • Consult GI specialists for further evaluation, potential confirmatory endoscopy, and management
  • May require parenteral nutrition 
  • Long term treatment may involve corticosteroids +/- immunosuppressives 

Cystic fibrosis 
(Exocrine pancreatic insufficiency/EPI)

  • Malabsorption of carbohydrates, fats, and protein
  • Weight loss
  • Newborn screen positive
  • Elevated sweat chloride test
  • Elevated fecal fat, low fecal elastase (<200 mcg/g) 
  • Direct pancreatic function test can be done to confirm EPI
  • Consult Pulmonology and GI specialists, Nutrition
  • Initiate pancreatic enzyme replacement therapy (PERT) - dosing recommendations can be provided by Pharmacy
  • Supplement fat-soluble vitamins (A, D, E, and K)
References:
1. Zella GC, Israel EJ. Chronic diarrhea in children. Pediatr Rev. 2012;33(5):207-218.
2. Mallon D, Hajjat T. Serologic evaluation of celiac disease for patients younger than 2 years of age. J Pediatr. 2020;224:16-17. 
3. Martin MG, Thiagarajah JR. Approach to chronic diarrhea in children >6 months in resource-abundant settings. In: Connor RF, ed. UpToDate. Wolters Kluwer. Accessed May 2026

These pathways do not establish a standard of care to be followed in every case. It is recognized that each case is different, and those individuals involved in providing health care are expected to use their judgment in determining what is in the best interests of the patient based on the circumstances existing at the time. It is impossible to anticipate all possible situations that may exist and to prepare a pathway for each. Accordingly, these pathways should guide care with the understanding that departures from them may be required at times.